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UAE accounting · By NAQIX · 15 October 2026

Free zone or mainland: bookkeeping differences for UAE companies

Whether your licence comes from a free zone authority or a mainland department affects who you can sell to, how VAT applies to some movements of goods and, under Corporate Tax, whether part of your income may be taxed at 0%. None of that can be answered at year end unless the books were set up for it. Here are the differences that matter for bookkeeping.

Editorial disclosure: this guide is published by NAQIX, an ERP software vendor. It is general information, not tax or legal advice; confirm how the rules apply to your business with your tax adviser.

The differences at a glance

TopicMainland companyFree zone company
LicenceIssued by the emirate's economic departmentIssued by the free zone authority, for activities that zone permits
Selling in the UAEDirectly to customers anywhere in the UAEOften limited for mainland customers, depending on the zone and activity
VATStandard UAE VAT rulesGenerally the same, with special rules for certain goods in designated zones
Corporate Tax0% up to AED 375,000 of taxable income, 9% aboveA qualifying free zone person may pay 0% on qualifying income and 9% on the rest
Audited accountsRequired for Corporate Tax above a revenue thresholdRequired for any qualifying free zone person

Each point has conditions and exceptions. Use this table to frame questions for your adviser, not as an answer.

VAT: free zones and designated zones

For VAT, most free zones are treated like the mainland: supplies made there are subject to UAE VAT in the usual way. Designated zones are a smaller group of zones named by Cabinet decision, which can be treated as outside the UAE for certain supplies of goods, provided strict conditions about the goods and their movement are met. Services supplied in a designated zone are generally subject to VAT as normal.

For bookkeeping, that means three habits. Record the VAT treatment on each invoice when it is raised. Keep each customer's location, including whether it is in a designated zone. And keep the evidence of where goods moved, such as customs and transport documents, with the invoice. Confirm designated-zone treatments case by case with your tax adviser.

Corporate Tax for free zone persons

A qualifying free zone person can pay 0% Corporate Tax on qualifying income. To qualify, a company generally has to maintain adequate substance in the zone, earn qualifying income, not elect to be taxed at the standard rates, follow the transfer-pricing rules and prepare audited financial statements. Non-qualifying revenue must also stay within a de minimis limit, the lower of 5% of total revenue or AED 5 million. Fail a condition and the company can lose the benefit for several years.

Most of these tests are applied to numbers in your books. Your adviser will want to see:

Setting up the books

  1. One company per licence. A free zone company and a mainland company are separate legal entities with separate books, even when the same people own them.
  2. Income tagged by stream. Use separate revenue accounts or cost centres for each activity and customer type your adviser needs to see.
  3. Customer master data. Record each customer's emirate, zone and TRN when the account is opened.
  4. Treatment on every invoice. Standard-rated, zero-rated, exempt or out of scope, decided at the time of sale.
  5. Inter-company accounts. Balances between your companies sit in named accounts and are agreed every month.
  6. A monthly review. Look at the revenue split each month, not only at year end, so a drift towards the de minimis limit is caught early.

Common mistakes

How NAQIX fits

NAQIX does not decide whether you are a qualifying free zone person, which income qualifies or how a designated-zone supply should be treated, and it does not calculate Corporate Tax. Those are decisions for you and your adviser; NAQIX keeps the records they rely on. The Accounting & reports and Tax & compliance pages list the features, the NAQIX page for the UAE covers the local setup, and the UAE accounting software overview compares the options.

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